2.Mannschaft : 2. Kreisklasse (1998/99)
| 1. | | FC Thüringen Jena II (N) | 20 | 16 | 2 | 2 | 69 | : | 25 | +44 | 50 | ||||
| 2. | | Post SV Jena II | 20 | 14 | 2 | 4 | 74 | : | 22 | +52 | 44 | ||||
| 3. | | FSV GW Stadtroda III (N) | 20 | 12 | 4 | 4 | 44 | : | 27 | +17 | 40 | ||||
| 4. | | 1.FC Großbockedra | 20 | 12 | 3 | 5 | 57 | : | 27 | +30 | 39 | ||||
| 5. | | FSV Jena Ost | 20 | 13 | 0 | 7 | 53 | : | 41 | +12 | 39 | ||||
| 6. | | SV Orlamünde II (N) | 20 | 9 | 3 | 8 | 49 | : | 37 | +12 | 30 | ||||
| 7. | | TSV 1885 Schkölen II | 20 | 7 | 1 | 12 | 32 | : | 43 | -11 | 22 | ||||
| 8. | | SG Union Isserstedt II | 20 | 5 | 5 | 10 | 30 | : | 50 | -20 | 20 | ||||
| 9. | | SV Lobeda 77 II (N) | 20 | 3 | 4 | 13 | 25 | : | 50 | -25 | 13 | ||||
| 10. | | SV 1955 Bucha II (N) | 20 | 3 | 2 | 15 | 16 | : | 91 | -75 | 11 | ||||
| 11. | | SpVgg RW Graitschen II (A) | 20 | 3 | 0 | 17 | 17 | : | 54 | -37 | 9 |


